PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.011G187200.1
Common NamePHAVU_011G187200g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family FAR1
Protein Properties Length: 856aa    MW: 97290.4 Da    PI: 6.5787
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.011G187200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1492e-1564138190
                FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                         +fY++Y+++vGFs+ + + ++ k +g i++ +f Cs+e +++++               ++C+a+l+v+++ d++w+vtk++++HnH+la
  Phvul.011G187200.1  64 SFYDAYSRDVGFSTHVGQFSRAKPDGPIITWDFACSREVFKRKNI--------------VSCNAMLRVERK-DANWVVTKFVEDHNHSLA 138
                         5***************************************99865..............55*********9.9***************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.6E-1264138IPR004330FAR1 DNA binding domain
PfamPF105513.1E-30268360IPR018289MULE transposase domain
PROSITE profilePS5096611.313545581IPR007527Zinc finger, SWIM-type
PfamPF044345.3E-11547579IPR007527Zinc finger, SWIM-type
SMARTSM005755.8E-8556583IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 856 aa     Download sequence    Send to blast
MDFEAVDEGE NSDRPASENV ETEKDEEQNM KVNLAETEVN NQDGDAHRKP LVGMLFESED  60
AAKSFYDAYS RDVGFSTHVG QFSRAKPDGP IITWDFACSR EVFKRKNIVS CNAMLRVERK  120
DANWVVTKFV EDHNHSLASS RKVQNRQPSK HSVGAARNVT ATFDARNESC ASLNGNNLEP  180
PISSVRNSSP AEKCHPMRSI GSLSYGRSSQ KRTLGRDAQN LLNYFKKMQG ENPGFYYAIQ  240
LDDENRMTNV FWADARSRTA YNYFGDAVIF DTMYRPNQYQ IPFAPFTGFN HHGQMVLFGC  300
SLLLDESESS FTWLFKTWLS AMNDRPPVSI TTDQDRAIQA AVAHVFPETR HCICKWHILR  360
EGQERLAHIY LAHPSFYGDL YGCINFSETT EDFESTWKSL LDKYDLQKND WLQAVYNARK  420
QWAPVYFRDT FFAVITSNHG VNSFFDGYVN QQTTIPLFFR QYEISLEHSL EKEVEADYET  480
ICNTPVLKTP SPMEQQAANM YTNKIYTKFQ EELVETFAYT ANNVENNGVI SKYRVAKYEH  540
DHKAYMVTLN ISEMKANCSC QMFEYSGILC RHVLTVFTVT NVLTLPSHYI LKRWTRNAKS  600
CIETDEKVTG PLDIENLTIR FNSLCREAVK LSEEGAIAVE TYNVAMNALR EGAKRVGIVK  660
KTIAKVTPPN TQGNGSCQED NSKKSPSSIS DAIPSLWPWQ DSLSHHLNHN DLGLPVTDLN  720
HPSMAPVSIH QDGGPPDNSV VLMYFKSMTW IIENKNSSQS SKIAVINMKL QDYGKSPLGE  780
TEVQFRVTRI TLEPMLRSMT YISQQLNAPV NRVAIINLRL QDTKTTTGQT EVKFQVSRDT  840
LGSMLRSMAY IREQL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007133534.10.0hypothetical protein PHAVU_011G187200g
SwissprotQ9ZVC90.0FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBLV7AKX20.0V7AKX2_PHAVU; Uncharacterized protein
STRINGGLYMA08G24400.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.20.0FAR1-related sequence 3